An association is a tuple of (cluster, account, user, partition). The partition may or may not be specified, so an association could just be (cluster, account, user).
To delete the association, one can do:
sacctmgr delete user where name=userfoo account=accountbar
Reference: this post by Samuel Fulcomer in slurm-users.
Turns out VirtualBox is not supported on macOS 14.2 Sonoma. But VMWare Fusion works.
UPDATE 2024-04-23 Latest VirtualBox 7.0.14 now does run.
Lenovo OneCLI 4.3.0 Linux has a bug in its bash completion file. Line 153 should have its hyphens "-" replaced with underscores "_":
ux_check_bmc_account_opts="--bmc --check-trust --never-check-trust --quiet --output --log --nolog --config --help"
The Python packaging landscape has evolved a bit since setuptools. I wanted to have a ready-made example for a common use case: a Python module that provides one or more commandline scripts, and uses module-level constants.
I based mine on the Python Packaging Tutorial. It’s available on GitHub.
Improvements to be made include specifying requirements.
The National Cancer Institute’s Genomic Data Commons (GDC) produces a tool which facilitates data transfer to and from their data repository called gdc-client, which is open sourced on GitHub.
My first pass at building it gave an error while trying to build lxml without Cython:
building 'lxml.etree' extension
creating build/temp.linux-x86_64-cpython-311
creating build/temp.linux-x86_64-cpython-311/src
creating build/temp.linux-x86_64-cpython-311/src/lxml
gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DCYTHON_CLINE_IN_TRACEBACK=0 -I/usr/include/libxml2 -Isrc -Isrc/lxml/includes -I/home/chind/Src/gdc-client/venv/include -I/home/chind/opt/include/python3.11 -c src/lxml/etree.c -o build/temp.linux-x86_64-cpython-311/src/lxml/etree.o -w
src/lxml/etree.c:289:12: fatal error: longintrepr.h: No such file or directory
289 | #include "longintrepr.h"
| ^~~~~~~~~~~~~~~
compilation terminated.
Compile failed: command '/usr/bin/gcc' failed with exit code 1
The fix was to build and install lxml from source, using Cython. And Cython < 3 is needed, i.e. Cython 0.29.x.
Once lxml 4.4.2 was installed manually, following the gdc-client build instructions was successful, and the gdc-client script was created.
For more detail, see this Gist.
Just released a bugfix for AlphaFold Singularity 2.3.2. Addresses the issue where the --output_dir argument to the run_singularity.py script was not handled correctly. Find the source release at GitHub. A pre-built Singularity image is also available at Sylabs.io.
Nvidia has a new ARM-based CPU which they announced some time ago. Here, Linus Tech Tips takes a look at it at COMPUTEX Taipei 2023. The design is similar to Apple silicon, where CPU and memory are on the same chip. Nvidia does split out the GPU, connected via Nvlink.
